Oncomine™ tumor specific panel files

<panel ID>_Oncomine_ amplicon_ insert_size_ histogram.png

A PNG image of a histogram that represents the distribution of amplicon insert sizes, excluding undigested forward and reverse primer sequences and barcode adapters.

<panel ID>_Oncomine_ amplicon_ size_ histogram.png

A PNG image of a histogram that represents the distribution of amplicon sizes, including undigested forward and reverse primer sequences and barcode adapters.

<panel ID>_Oncomine_ coverage_ details.csv

A CSV file that contains exon-level coverage details, including target gene, number of amplicons that are required to cover the exon, and number of bases covered by the amplicons.

<panel ID>_Oncomine_ coverage_ summary.csv

A CSV file that contains gene-level coverage summary, including the total number of amplicons required to cover the CDS region of the gene and total number of bases covered by the amplicons.

<panel ID>_Oncomine_ Designed.bed

A BED file that defines genomic coordinates that are targeted by the primers.

<panel ID>_Oncomine_ hotspot.bed

A BED file that contains hotspot genomic coordinates that are covered by the <panel ID>_Oncomine_ Designed.bed file.

<panel ID>_Oncomine_ Missed.bed

A BED file that contains coordinates that are missed by the designer; the difference between submitted and designed.

<panel ID>_Oncomine_ Submitted.bed

A BED file that contains genomic coordinates the primers are designed to target.

plan.json

A JSON file that contains panel information.